Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE76690.1 | SFF49207.1 | SAMN05421541_103473 | SAMN05421541_111278 | Exodeoxyribonuclease-3. | DNA polymerase III beta subunit, central domain. | 0.921 |
SFE76690.1 | SFF49632.1 | SAMN05421541_103473 | SAMN05421541_111333 | Exodeoxyribonuclease-3. | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II. | 0.854 |
SFE76690.1 | SFF52227.1 | SAMN05421541_103473 | SAMN05421541_11293 | Exodeoxyribonuclease-3. | A/G-specific adenine glycosylase. | 0.951 |
SFE76690.1 | SFF56176.1 | SAMN05421541_103473 | SAMN05421541_113135 | Exodeoxyribonuclease-3. | Uncharacterized HhH-GPD family protein. | 0.921 |
SFE76690.1 | SFF68186.1 | SAMN05421541_103473 | SAMN05421541_117180 | Exodeoxyribonuclease-3. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.915 |
SFE76690.1 | SFF79610.1 | SAMN05421541_103473 | SAMN05421541_12273 | Exodeoxyribonuclease-3. | Deoxyribonuclease-4. | 0.922 |
SFE76690.1 | nfo | SAMN05421541_103473 | SAMN05421541_102447 | Exodeoxyribonuclease-3. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.922 |
SFE76690.1 | nth | SAMN05421541_103473 | SAMN05421541_11242 | Exodeoxyribonuclease-3. | Endonuclease-3; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.927 |
SFE76690.1 | polA | SAMN05421541_103473 | SAMN05421541_102328 | Exodeoxyribonuclease-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.886 |
SFE76690.1 | ung | SAMN05421541_103473 | SAMN05421541_110234 | Exodeoxyribonuclease-3. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.874 |
SFF49207.1 | SFE76690.1 | SAMN05421541_111278 | SAMN05421541_103473 | DNA polymerase III beta subunit, central domain. | Exodeoxyribonuclease-3. | 0.921 |
SFF49207.1 | SFF52227.1 | SAMN05421541_111278 | SAMN05421541_11293 | DNA polymerase III beta subunit, central domain. | A/G-specific adenine glycosylase. | 0.778 |
SFF49207.1 | SFF68186.1 | SAMN05421541_111278 | SAMN05421541_117180 | DNA polymerase III beta subunit, central domain. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.962 |
SFF49207.1 | polA | SAMN05421541_111278 | SAMN05421541_102328 | DNA polymerase III beta subunit, central domain. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.996 |
SFF49207.1 | ung | SAMN05421541_111278 | SAMN05421541_110234 | DNA polymerase III beta subunit, central domain. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.880 |
SFF49632.1 | SFE76690.1 | SAMN05421541_111333 | SAMN05421541_103473 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II. | Exodeoxyribonuclease-3. | 0.854 |
SFF49632.1 | SFF52227.1 | SAMN05421541_111333 | SAMN05421541_11293 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II. | A/G-specific adenine glycosylase. | 0.555 |
SFF49632.1 | SFF56176.1 | SAMN05421541_111333 | SAMN05421541_113135 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II. | Uncharacterized HhH-GPD family protein. | 0.474 |
SFF49632.1 | SFF79610.1 | SAMN05421541_111333 | SAMN05421541_12273 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II. | Deoxyribonuclease-4. | 0.450 |
SFF49632.1 | nfo | SAMN05421541_111333 | SAMN05421541_102447 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.450 |
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