SFE89479.1 protein (Actinoplanes philippinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFE89479.1

Nitronate monooxygenase. (472 aa)

Predicted Functional Partners:

SFE41182.1

0.976

SFE32238.1

0.946

SFE93374.1

0.780

SFF89480.1

0.780

SFE93467.1

0.733

guaA

0.721

SFE40329.1

0.697

acpP

0.697

SFF60076.1

0.697

SFF45279.1

0.680

Your Current Organism:

Actinoplanes philippinensis

NCBI taxonomy Id: 35752
Other names: A. philippinensis, ATCC 12427, DSM 43019, IFO 13878, JCM 3001, NBRC 13878, NRRL 2506, VKM Ac-842

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFE32238.1	SFE40329.1	SAMN05421541_101158	SAMN05421541_101578	Helix-hairpin-helix domain-containing protein.	Acyl carrier protein.	0.959
SFE32238.1	SFE41182.1	SAMN05421541_101158	SAMN05421541_101615	Helix-hairpin-helix domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SFE32238.1	SFE89479.1	SAMN05421541_101158	SAMN05421541_104291	Helix-hairpin-helix domain-containing protein.	Nitronate monooxygenase.	0.946
SFE32238.1	SFE93374.1	SAMN05421541_101158	SAMN05421541_104541	Helix-hairpin-helix domain-containing protein.	Acyl transferase domain-containing protein.	0.998
SFE32238.1	SFE93467.1	SAMN05421541_101158	SAMN05421541_104547	Helix-hairpin-helix domain-containing protein.	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	0.999
SFE32238.1	SFF45279.1	SAMN05421541_101158	SAMN05421541_110437	Helix-hairpin-helix domain-containing protein.	5'-nucleotidase.	0.849
SFE32238.1	SFF60076.1	SAMN05421541_101158	SAMN05421541_114246	Helix-hairpin-helix domain-containing protein.	Acyl carrier protein.	0.959
SFE32238.1	SFF89480.1	SAMN05421541_101158	SAMN05421541_12864	Helix-hairpin-helix domain-containing protein.	Rifamycin polyketide synthase modules 1, 2 and 3.	0.998
SFE32238.1	acpP	SAMN05421541_101158	SAMN05421541_102628	Helix-hairpin-helix domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.959
SFE32238.1	guaA	SAMN05421541_101158	SAMN05421541_110204	Helix-hairpin-helix domain-containing protein.	GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.	0.969
SFE40329.1	SFE32238.1	SAMN05421541_101578	SAMN05421541_101158	Acyl carrier protein.	Helix-hairpin-helix domain-containing protein.	0.959
SFE40329.1	SFE41182.1	SAMN05421541_101578	SAMN05421541_101615	Acyl carrier protein.	Amino acid adenylation domain-containing protein.	0.997
SFE40329.1	SFE89479.1	SAMN05421541_101578	SAMN05421541_104291	Acyl carrier protein.	Nitronate monooxygenase.	0.697
SFE40329.1	SFE93374.1	SAMN05421541_101578	SAMN05421541_104541	Acyl carrier protein.	Acyl transferase domain-containing protein.	0.883
SFE40329.1	SFE93467.1	SAMN05421541_101578	SAMN05421541_104547	Acyl carrier protein.	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.	0.738
SFE40329.1	SFF89480.1	SAMN05421541_101578	SAMN05421541_12864	Acyl carrier protein.	Rifamycin polyketide synthase modules 1, 2 and 3.	0.883
SFE41182.1	SFE32238.1	SAMN05421541_101615	SAMN05421541_101158	Amino acid adenylation domain-containing protein.	Helix-hairpin-helix domain-containing protein.	0.999
SFE41182.1	SFE40329.1	SAMN05421541_101615	SAMN05421541_101578	Amino acid adenylation domain-containing protein.	Acyl carrier protein.	0.997
SFE41182.1	SFE89479.1	SAMN05421541_101615	SAMN05421541_104291	Amino acid adenylation domain-containing protein.	Nitronate monooxygenase.	0.976
SFE41182.1	SFE93374.1	SAMN05421541_101615	SAMN05421541_104541	Amino acid adenylation domain-containing protein.	Acyl transferase domain-containing protein.	0.999