Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFF03999.1 | SFF11179.1 | SAMN05421541_105360 | SAMN05421541_106120 | Hypothetical protein. | Hypothetical protein. | 0.709 |
SFF03999.1 | SFF15959.1 | SAMN05421541_105360 | SAMN05421541_106496 | Hypothetical protein. | Sulfotransferase domain-containing protein. | 0.770 |
SFF03999.1 | SFF67572.1 | SAMN05421541_105360 | SAMN05421541_117128 | Hypothetical protein. | Hypothetical protein. | 0.791 |
SFF03999.1 | rpoA | SAMN05421541_105360 | SAMN05421541_110271 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.642 |
SFF03999.1 | rpoZ | SAMN05421541_105360 | SAMN05421541_10527 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.561 |
SFF11179.1 | SFF03999.1 | SAMN05421541_106120 | SAMN05421541_105360 | Hypothetical protein. | Hypothetical protein. | 0.709 |
SFF11179.1 | SFF15959.1 | SAMN05421541_106120 | SAMN05421541_106496 | Hypothetical protein. | Sulfotransferase domain-containing protein. | 0.774 |
SFF11179.1 | SFF67572.1 | SAMN05421541_106120 | SAMN05421541_117128 | Hypothetical protein. | Hypothetical protein. | 0.763 |
SFF12341.1 | SFF15959.1 | SAMN05421541_106206 | SAMN05421541_106496 | Ankyrin repeat-containing protein. | Sulfotransferase domain-containing protein. | 0.769 |
SFF12341.1 | SFF67704.1 | SAMN05421541_106206 | SAMN05421541_117140 | Ankyrin repeat-containing protein. | Molecular chaperone HtpG. | 0.547 |
SFF12341.1 | alaS | SAMN05421541_106206 | SAMN05421541_10551 | Ankyrin repeat-containing protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.404 |
SFF12341.1 | alaS-2 | SAMN05421541_106206 | SAMN05421541_108123 | Ankyrin repeat-containing protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.404 |
SFF12341.1 | htpG | SAMN05421541_106206 | SAMN05421541_107229 | Ankyrin repeat-containing protein. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.547 |
SFF15959.1 | SFF03999.1 | SAMN05421541_106496 | SAMN05421541_105360 | Sulfotransferase domain-containing protein. | Hypothetical protein. | 0.770 |
SFF15959.1 | SFF11179.1 | SAMN05421541_106496 | SAMN05421541_106120 | Sulfotransferase domain-containing protein. | Hypothetical protein. | 0.774 |
SFF15959.1 | SFF12341.1 | SAMN05421541_106496 | SAMN05421541_106206 | Sulfotransferase domain-containing protein. | Ankyrin repeat-containing protein. | 0.769 |
SFF15959.1 | SFF67572.1 | SAMN05421541_106496 | SAMN05421541_117128 | Sulfotransferase domain-containing protein. | Hypothetical protein. | 0.770 |
SFF15959.1 | SFF67704.1 | SAMN05421541_106496 | SAMN05421541_117140 | Sulfotransferase domain-containing protein. | Molecular chaperone HtpG. | 0.789 |
SFF15959.1 | alaS | SAMN05421541_106496 | SAMN05421541_10551 | Sulfotransferase domain-containing protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.785 |
SFF15959.1 | alaS-2 | SAMN05421541_106496 | SAMN05421541_108123 | Sulfotransferase domain-containing protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.785 |
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