Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE85021.1 | SFF20236.1 | SAMN05421541_10431 | SAMN05421541_107126 | Hypothetical protein. | Zn-dependent protease with chaperone function. | 0.515 |
SFF20236.1 | SFE85021.1 | SAMN05421541_107126 | SAMN05421541_10431 | Zn-dependent protease with chaperone function. | Hypothetical protein. | 0.515 |
SFF20236.1 | SFF20247.1 | SAMN05421541_107126 | SAMN05421541_107127 | Zn-dependent protease with chaperone function. | Predicted transcriptional regulator. | 0.967 |
SFF20236.1 | SFF20264.1 | SAMN05421541_107126 | SAMN05421541_107128 | Zn-dependent protease with chaperone function. | Cytochrome d ubiquinol oxidase subunit I. | 0.649 |
SFF20236.1 | SFF20270.1 | SAMN05421541_107126 | SAMN05421541_107129 | Zn-dependent protease with chaperone function. | Cytochrome d ubiquinol oxidase subunit II. | 0.645 |
SFF20236.1 | SFF20278.1 | SAMN05421541_107126 | SAMN05421541_107130 | Zn-dependent protease with chaperone function. | ATP-binding cassette, subfamily C, CydCD. | 0.661 |
SFF20236.1 | SFF20293.1 | SAMN05421541_107126 | SAMN05421541_107131 | Zn-dependent protease with chaperone function. | DNA-binding transcriptional regulator, AcrR family. | 0.532 |
SFF20236.1 | SFF53257.1 | SAMN05421541_107126 | SAMN05421541_112239 | Zn-dependent protease with chaperone function. | Flagellar motor switch protein FliM. | 0.658 |
SFF20236.1 | SFF97653.1 | SAMN05421541_107126 | SAMN05421541_13738 | Zn-dependent protease with chaperone function. | Predicted transcriptional regulator. | 0.834 |
SFF20236.1 | ftsH | SAMN05421541_107126 | SAMN05421541_11255 | Zn-dependent protease with chaperone function. | Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.473 |
SFF20236.1 | grpE | SAMN05421541_107126 | SAMN05421541_11775 | Zn-dependent protease with chaperone function. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.428 |
SFF20247.1 | SFF20236.1 | SAMN05421541_107127 | SAMN05421541_107126 | Predicted transcriptional regulator. | Zn-dependent protease with chaperone function. | 0.967 |
SFF20247.1 | SFF20264.1 | SAMN05421541_107127 | SAMN05421541_107128 | Predicted transcriptional regulator. | Cytochrome d ubiquinol oxidase subunit I. | 0.620 |
SFF20247.1 | SFF20270.1 | SAMN05421541_107127 | SAMN05421541_107129 | Predicted transcriptional regulator. | Cytochrome d ubiquinol oxidase subunit II. | 0.607 |
SFF20247.1 | SFF20278.1 | SAMN05421541_107127 | SAMN05421541_107130 | Predicted transcriptional regulator. | ATP-binding cassette, subfamily C, CydCD. | 0.699 |
SFF20247.1 | SFF20293.1 | SAMN05421541_107127 | SAMN05421541_107131 | Predicted transcriptional regulator. | DNA-binding transcriptional regulator, AcrR family. | 0.532 |
SFF20264.1 | SFF20236.1 | SAMN05421541_107128 | SAMN05421541_107126 | Cytochrome d ubiquinol oxidase subunit I. | Zn-dependent protease with chaperone function. | 0.649 |
SFF20264.1 | SFF20247.1 | SAMN05421541_107128 | SAMN05421541_107127 | Cytochrome d ubiquinol oxidase subunit I. | Predicted transcriptional regulator. | 0.620 |
SFF20264.1 | SFF20270.1 | SAMN05421541_107128 | SAMN05421541_107129 | Cytochrome d ubiquinol oxidase subunit I. | Cytochrome d ubiquinol oxidase subunit II. | 0.999 |
SFF20264.1 | SFF20278.1 | SAMN05421541_107128 | SAMN05421541_107130 | Cytochrome d ubiquinol oxidase subunit I. | ATP-binding cassette, subfamily C, CydCD. | 0.998 |
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