SFF43582.1 protein (Actinoplanes philippinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFF43582.1

Membrane protein. (262 aa)

Predicted Functional Partners:

SFF43590.1

0.711

SFE42562.1

0.585

SFF59445.1

0.509

glmS

0.506

SFF01790.1

0.493

SFF47734.1

0.488

SFF71929.1

0.486

SFF11790.1

0.480

SFF34732.1

0.474

SFF99191.1

0.455

Your Current Organism:

Actinoplanes philippinensis

NCBI taxonomy Id: 35752
Other names: A. philippinensis, ATCC 12427, DSM 43019, IFO 13878, JCM 3001, NBRC 13878, NRRL 2506, VKM Ac-842

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFE42562.1	SFF43582.1	SAMN05421541_101678	SAMN05421541_110243	Arylamine N-acetyltransferase.	Membrane protein.	0.585
SFF01790.1	SFF43582.1	SAMN05421541_105217	SAMN05421541_110243	Short repeat-containing protein of unknown function.	Membrane protein.	0.493
SFF11790.1	SFF43582.1	SAMN05421541_106166	SAMN05421541_110243	Short repeat-containing protein of unknown function.	Membrane protein.	0.480
SFF34732.1	SFF43582.1	SAMN05421541_10965	SAMN05421541_110243	Short repeat-containing protein of unknown function.	Membrane protein.	0.474
SFF43582.1	SFE42562.1	SAMN05421541_110243	SAMN05421541_101678	Membrane protein.	Arylamine N-acetyltransferase.	0.585
SFF43582.1	SFF01790.1	SAMN05421541_110243	SAMN05421541_105217	Membrane protein.	Short repeat-containing protein of unknown function.	0.493
SFF43582.1	SFF11790.1	SAMN05421541_110243	SAMN05421541_106166	Membrane protein.	Short repeat-containing protein of unknown function.	0.480
SFF43582.1	SFF34732.1	SAMN05421541_110243	SAMN05421541_10965	Membrane protein.	Short repeat-containing protein of unknown function.	0.474
SFF43582.1	SFF43590.1	SAMN05421541_110243	SAMN05421541_110244	Membrane protein.	N-succinyldiaminopimelate aminotransferase.	0.711
SFF43582.1	SFF47734.1	SAMN05421541_110243	SAMN05421541_11194	Membrane protein.	Short repeat-containing protein of unknown function.	0.488
SFF43582.1	SFF59445.1	SAMN05421541_110243	SAMN05421541_114165	Membrane protein.	Short repeat-containing protein of unknown function.	0.509
SFF43582.1	SFF71929.1	SAMN05421541_110243	SAMN05421541_11939	Membrane protein.	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.	0.486
SFF43582.1	SFF99191.1	SAMN05421541_110243	SAMN05421541_13931	Membrane protein.	Zn-dependent protease with chaperone function.	0.455
SFF43582.1	glmS	SAMN05421541_110243	SAMN05421541_110242	Membrane protein.	Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.506
SFF43590.1	SFF43582.1	SAMN05421541_110244	SAMN05421541_110243	N-succinyldiaminopimelate aminotransferase.	Membrane protein.	0.711
SFF43590.1	glmS	SAMN05421541_110244	SAMN05421541_110242	N-succinyldiaminopimelate aminotransferase.	Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.736
SFF47734.1	SFF43582.1	SAMN05421541_11194	SAMN05421541_110243	Short repeat-containing protein of unknown function.	Membrane protein.	0.488
SFF59445.1	SFF43582.1	SAMN05421541_114165	SAMN05421541_110243	Short repeat-containing protein of unknown function.	Membrane protein.	0.509
SFF71929.1	SFF43582.1	SAMN05421541_11939	SAMN05421541_110243	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.	Membrane protein.	0.486
SFF99191.1	SFF43582.1	SAMN05421541_13931	SAMN05421541_110243	Zn-dependent protease with chaperone function.	Membrane protein.	0.455