Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE60915.1 | SFF42165.1 | SAMN05421541_102590 | SAMN05421541_11097 | Threonine dehydratase. | Threonine dehydratase. | 0.949 |
SFE60915.1 | SFF47133.1 | SAMN05421541_102590 | SAMN05421541_11127 | Threonine dehydratase. | 3-isopropylmalate dehydrogenase. | 0.964 |
SFE60915.1 | SFF47164.1 | SAMN05421541_102590 | SAMN05421541_11131 | Threonine dehydratase. | Acetolactate synthase, small subunit. | 0.991 |
SFE60915.1 | SFF47173.1 | SAMN05421541_102590 | SAMN05421541_11132 | Threonine dehydratase. | Acetolactate synthase, large subunit. | 0.985 |
SFE60915.1 | SFF53822.1 | SAMN05421541_102590 | SAMN05421541_112307 | Threonine dehydratase. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 0.700 |
SFE60915.1 | SFF53830.1 | SAMN05421541_102590 | SAMN05421541_112308 | Threonine dehydratase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.860 |
SFE60915.1 | ilvC | SAMN05421541_102590 | SAMN05421541_108290 | Threonine dehydratase. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.663 |
SFE60915.1 | ilvC-2 | SAMN05421541_102590 | SAMN05421541_11130 | Threonine dehydratase. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.666 |
SFE60915.1 | leuA | SAMN05421541_102590 | SAMN05421541_11217 | Threonine dehydratase. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.426 |
SFF42165.1 | SFE60915.1 | SAMN05421541_11097 | SAMN05421541_102590 | Threonine dehydratase. | Threonine dehydratase. | 0.949 |
SFF42165.1 | SFF47133.1 | SAMN05421541_11097 | SAMN05421541_11127 | Threonine dehydratase. | 3-isopropylmalate dehydrogenase. | 0.959 |
SFF42165.1 | SFF47164.1 | SAMN05421541_11097 | SAMN05421541_11131 | Threonine dehydratase. | Acetolactate synthase, small subunit. | 0.991 |
SFF42165.1 | SFF47173.1 | SAMN05421541_11097 | SAMN05421541_11132 | Threonine dehydratase. | Acetolactate synthase, large subunit. | 0.985 |
SFF42165.1 | SFF53822.1 | SAMN05421541_11097 | SAMN05421541_112307 | Threonine dehydratase. | 2-oxoglutarate ferredoxin oxidoreductase subunit beta. | 0.700 |
SFF42165.1 | SFF53830.1 | SAMN05421541_11097 | SAMN05421541_112308 | Threonine dehydratase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.860 |
SFF42165.1 | ilvC | SAMN05421541_11097 | SAMN05421541_108290 | Threonine dehydratase. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.696 |
SFF42165.1 | ilvC-2 | SAMN05421541_11097 | SAMN05421541_11130 | Threonine dehydratase. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.699 |
SFF42165.1 | leuA | SAMN05421541_11097 | SAMN05421541_11217 | Threonine dehydratase. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.508 |
SFF47089.1 | SFF47133.1 | SAMN05421541_11122 | SAMN05421541_11127 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 3-isopropylmalate dehydrogenase. | 0.835 |
SFF47089.1 | SFF47164.1 | SAMN05421541_11122 | SAMN05421541_11131 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Acetolactate synthase, small subunit. | 0.977 |
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