STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF58159.1Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding. (199 aa)    
Predicted Functional Partners:
SFF58172.1
Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain.
 
     0.642
SFF60006.1
Putative zinc-finger.
  
     0.500
SFF84031.1
FR47-like protein.
  
     0.499
SFF77122.1
Catechol 2,3-dioxygenase.
  
    0.493
SFF91449.1
Hypothetical protein.
  
     0.474
SFF98069.1
FAD binding domain-containing protein.
  
     0.452
SFF36336.1
O-antigen ligase.
  
     0.440
SFF62759.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.437
SFF59261.1
Hypothetical protein.
  
     0.418
SFE85985.1
Uncharacterized membrane protein.
  
     0.412
Your Current Organism:
Actinoplanes philippinensis
NCBI taxonomy Id: 35752
Other names: A. philippinensis, ATCC 12427, DSM 43019, IFO 13878, JCM 3001, NBRC 13878, NRRL 2506, VKM Ac-842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.