SFF61927.1 protein (Actinoplanes philippinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFF61927.1

Protein of unknown function. (121 aa)

Predicted Functional Partners:

SFF61921.1

0.952

SFF61915.1

0.948

SFF61939.1

0.947

SFF27538.1

0.838

SFF55967.1

0.838

SFF65000.1

0.838

SFE41182.1

0.835

SFF47390.1

0.832

SFE32238.1

0.827

SFF50108.1

0.822

Your Current Organism:

Actinoplanes philippinensis

NCBI taxonomy Id: 35752
Other names: A. philippinensis, ATCC 12427, DSM 43019, IFO 13878, JCM 3001, NBRC 13878, NRRL 2506, VKM Ac-842

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFE32238.1	SFE41182.1	SAMN05421541_101158	SAMN05421541_101615	Helix-hairpin-helix domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SFE32238.1	SFF27538.1	SAMN05421541_101158	SAMN05421541_10857	Helix-hairpin-helix domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.991
SFE32238.1	SFF47390.1	SAMN05421541_101158	SAMN05421541_11159	Helix-hairpin-helix domain-containing protein.	Electron transfer flavoprotein alpha subunit.	0.932
SFE32238.1	SFF55967.1	SAMN05421541_101158	SAMN05421541_113101	Helix-hairpin-helix domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase.	0.991
SFE32238.1	SFF61927.1	SAMN05421541_101158	SAMN05421541_115101	Helix-hairpin-helix domain-containing protein.	Protein of unknown function.	0.827
SFE32238.1	SFF65000.1	SAMN05421541_101158	SAMN05421541_116138	Helix-hairpin-helix domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.991
SFE41182.1	SFE32238.1	SAMN05421541_101615	SAMN05421541_101158	Amino acid adenylation domain-containing protein.	Helix-hairpin-helix domain-containing protein.	0.999
SFE41182.1	SFF27538.1	SAMN05421541_101615	SAMN05421541_10857	Amino acid adenylation domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.996
SFE41182.1	SFF47390.1	SAMN05421541_101615	SAMN05421541_11159	Amino acid adenylation domain-containing protein.	Electron transfer flavoprotein alpha subunit.	0.901
SFE41182.1	SFF55967.1	SAMN05421541_101615	SAMN05421541_113101	Amino acid adenylation domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase.	0.996
SFE41182.1	SFF61927.1	SAMN05421541_101615	SAMN05421541_115101	Amino acid adenylation domain-containing protein.	Protein of unknown function.	0.835
SFE41182.1	SFF65000.1	SAMN05421541_101615	SAMN05421541_116138	Amino acid adenylation domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.996
SFF27538.1	SFE32238.1	SAMN05421541_10857	SAMN05421541_101158	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	Helix-hairpin-helix domain-containing protein.	0.991
SFF27538.1	SFE41182.1	SAMN05421541_10857	SAMN05421541_101615	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	Amino acid adenylation domain-containing protein.	0.996
SFF27538.1	SFF47390.1	SAMN05421541_10857	SAMN05421541_11159	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	Electron transfer flavoprotein alpha subunit.	0.874
SFF27538.1	SFF55967.1	SAMN05421541_10857	SAMN05421541_113101	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	3-hydroxyacyl-CoA dehydrogenase.	0.757
SFF27538.1	SFF61927.1	SAMN05421541_10857	SAMN05421541_115101	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	Protein of unknown function.	0.838
SFF27538.1	SFF65000.1	SAMN05421541_10857	SAMN05421541_116138	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.797
SFF47390.1	SFE32238.1	SAMN05421541_11159	SAMN05421541_101158	Electron transfer flavoprotein alpha subunit.	Helix-hairpin-helix domain-containing protein.	0.932
SFF47390.1	SFE41182.1	SAMN05421541_11159	SAMN05421541_101615	Electron transfer flavoprotein alpha subunit.	Amino acid adenylation domain-containing protein.	0.901