STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF71913.1Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family. (350 aa)    
Predicted Functional Partners:
SFF69167.1
Hypothetical protein.
 
     0.671
SFF36037.1
Hypothetical protein.
 
     0.627
SFF27942.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
   
 0.618
SFG01731.1
Ricin-type beta-trefoil lectin domain-like; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.609
SFF09718.1
Hypothetical protein.
 
     0.608
SFF82245.1
Hypothetical protein.
  
     0.606
SFE85839.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
   
 0.587
SFG01692.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
   
 0.584
SFE85769.1
alpha-N-arabinofuranosidase.
 
   
 0.575
SFF74050.1
Lysophospholipase L1.
  
     0.575
Your Current Organism:
Actinoplanes philippinensis
NCBI taxonomy Id: 35752
Other names: A. philippinensis, ATCC 12427, DSM 43019, IFO 13878, JCM 3001, NBRC 13878, NRRL 2506, VKM Ac-842
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