Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFF36244.1 | SFF96481.1 | SAMN05421541_109213 | SAMN05421541_13611 | PELOTA RNA binding domain-containing protein. | Hypothetical protein. | 0.998 |
SFF36244.1 | rplV | SAMN05421541_109213 | SAMN05421541_110295 | PELOTA RNA binding domain-containing protein. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
SFF36244.1 | rplW | SAMN05421541_109213 | SAMN05421541_110298 | PELOTA RNA binding domain-containing protein. | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
SFF36244.1 | rpsC | SAMN05421541_109213 | SAMN05421541_110294 | PELOTA RNA binding domain-containing protein. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
SFF36244.1 | rpsE | SAMN05421541_109213 | SAMN05421541_110283 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
SFF36244.1 | rpsH | SAMN05421541_109213 | SAMN05421541_110286 | PELOTA RNA binding domain-containing protein. | Small subunit ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
SFF36244.1 | rpsJ | SAMN05421541_109213 | SAMN05421541_110301 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
SFF36244.1 | rpsK | SAMN05421541_109213 | SAMN05421541_110273 | PELOTA RNA binding domain-containing protein. | Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
SFF36244.1 | rpsQ | SAMN05421541_109213 | SAMN05421541_110291 | PELOTA RNA binding domain-containing protein. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
SFF36244.1 | rpsS | SAMN05421541_109213 | SAMN05421541_110296 | PELOTA RNA binding domain-containing protein. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
SFF96481.1 | SFF36244.1 | SAMN05421541_13611 | SAMN05421541_109213 | Hypothetical protein. | PELOTA RNA binding domain-containing protein. | 0.998 |
SFF96481.1 | rplV | SAMN05421541_13611 | SAMN05421541_110295 | Hypothetical protein. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.998 |
SFF96481.1 | rplW | SAMN05421541_13611 | SAMN05421541_110298 | Hypothetical protein. | Large subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.998 |
SFF96481.1 | rpsC | SAMN05421541_13611 | SAMN05421541_110294 | Hypothetical protein. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
SFF96481.1 | rpsE | SAMN05421541_13611 | SAMN05421541_110283 | Hypothetical protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |
SFF96481.1 | rpsH | SAMN05421541_13611 | SAMN05421541_110286 | Hypothetical protein. | Small subunit ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.998 |
SFF96481.1 | rpsJ | SAMN05421541_13611 | SAMN05421541_110301 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.998 |
SFF96481.1 | rpsK | SAMN05421541_13611 | SAMN05421541_110273 | Hypothetical protein. | Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.998 |
SFF96481.1 | rpsQ | SAMN05421541_13611 | SAMN05421541_110291 | Hypothetical protein. | Small subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
SFF96481.1 | rpsS | SAMN05421541_13611 | SAMN05421541_110296 | Hypothetical protein. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.998 |
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