Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKE40295.1 | AKE42083.1 | UL82_00260 | UL82_09730 | Nitroreductase. | Hypothetical protein. | 0.484 |
| AKE40295.1 | tadA | UL82_00260 | UL82_00595 | Nitroreductase. | Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.456 |
| AKE41334.1 | AKE42083.1 | UL82_05795 | UL82_09730 | Zn-dependent hydrolase, glyoxylase. | Hypothetical protein. | 0.901 |
| AKE42083.1 | AKE40295.1 | UL82_09730 | UL82_00260 | Hypothetical protein. | Nitroreductase. | 0.484 |
| AKE42083.1 | AKE41334.1 | UL82_09730 | UL82_05795 | Hypothetical protein. | Zn-dependent hydrolase, glyoxylase. | 0.901 |
| AKE42083.1 | ilvA | UL82_09730 | UL82_06850 | Hypothetical protein. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.835 |
| AKE42083.1 | qcrA | UL82_09730 | UL82_07145 | Hypothetical protein. | Rieske Fe-S protein. | 0.408 |
| AKE42083.1 | sdaA | UL82_09730 | UL82_05785 | Hypothetical protein. | L-serine dehydratase, iron-sulfur-dependent, single chain form. | 0.800 |
| AKE42083.1 | tadA | UL82_09730 | UL82_00595 | Hypothetical protein. | Cytosine/adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.414 |
| AKE42083.1 | tdcG | UL82_09730 | UL82_01720 | Hypothetical protein. | L-serine dehydratase, iron-sulfur-dependent, single chain form. | 0.800 |
| AKE42083.1 | trpA | UL82_09730 | UL82_10670 | Hypothetical protein. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.800 |
| AKE42083.1 | trpB | UL82_09730 | UL82_10665 | Hypothetical protein. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.821 |
| ilvA | AKE42083.1 | UL82_06850 | UL82_09730 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Hypothetical protein. | 0.835 |
| ilvA | sdaA | UL82_06850 | UL82_05785 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | L-serine dehydratase, iron-sulfur-dependent, single chain form. | 0.930 |
| ilvA | tdcG | UL82_06850 | UL82_01720 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | L-serine dehydratase, iron-sulfur-dependent, single chain form. | 0.930 |
| ilvA | trpA | UL82_06850 | UL82_10670 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.918 |
| ilvA | trpB | UL82_06850 | UL82_10665 | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.935 |
| qcrA | AKE42083.1 | UL82_07145 | UL82_09730 | Rieske Fe-S protein. | Hypothetical protein. | 0.408 |
| sdaA | AKE42083.1 | UL82_05785 | UL82_09730 | L-serine dehydratase, iron-sulfur-dependent, single chain form. | Hypothetical protein. | 0.800 |
| sdaA | ilvA | UL82_05785 | UL82_06850 | L-serine dehydratase, iron-sulfur-dependent, single chain form. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.930 |
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