Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001044155_01672 | GCA_001044155_01673 | GCA_001044155_01672 | GCA_001044155_01673 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001044155_01672 | argC | GCA_001044155_01672 | GCA_001044155_01675 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.733 |
GCA_001044155_01672 | argD | GCA_001044155_01672 | GCA_001044155_01678 | Unannotated protein. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.790 |
GCA_001044155_01672 | fusA | GCA_001044155_01672 | GCA_001044155_00870 | Unannotated protein. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.483 |
GCA_001044155_01672 | gcp_2 | GCA_001044155_01672 | GCA_001044155_01952 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.418 |
GCA_001044155_01672 | pheS | GCA_001044155_01672 | GCA_001044155_01671 | Unannotated protein. | Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.999 |
GCA_001044155_01672 | pheT | GCA_001044155_01672 | GCA_001044155_01674 | Unannotated protein. | Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.999 |
GCA_001044155_01672 | rplT | GCA_001044155_01672 | GCA_001044155_01669 | Unannotated protein. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.817 |
GCA_001044155_01672 | rpoA | GCA_001044155_01672 | GCA_001044155_00926 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.656 |
GCA_001044155_01673 | GCA_001044155_01672 | GCA_001044155_01673 | GCA_001044155_01672 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001044155_01673 | argC | GCA_001044155_01673 | GCA_001044155_01675 | Unannotated protein. | Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.733 |
GCA_001044155_01673 | argD | GCA_001044155_01673 | GCA_001044155_01678 | Unannotated protein. | Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.790 |
GCA_001044155_01673 | fusA | GCA_001044155_01673 | GCA_001044155_00870 | Unannotated protein. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.483 |
GCA_001044155_01673 | gcp_2 | GCA_001044155_01673 | GCA_001044155_01952 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.494 |
GCA_001044155_01673 | pheS | GCA_001044155_01673 | GCA_001044155_01671 | Unannotated protein. | Unannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.999 |
GCA_001044155_01673 | pheT | GCA_001044155_01673 | GCA_001044155_01674 | Unannotated protein. | Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.999 |
GCA_001044155_01673 | rplT | GCA_001044155_01673 | GCA_001044155_01669 | Unannotated protein. | Unannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.780 |
GCA_001044155_01673 | rpoA | GCA_001044155_01673 | GCA_001044155_00926 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.739 |
argC | GCA_001044155_01672 | GCA_001044155_01675 | GCA_001044155_01672 | Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Unannotated protein. | 0.733 |
argC | GCA_001044155_01673 | GCA_001044155_01675 | GCA_001044155_01673 | Unannotated protein; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | Unannotated protein. | 0.733 |
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