STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0010MalF-type ABC sugar transport systems permease. (330 aa)    
Predicted Functional Partners:
BCHO_0009
Sugar ABC transporter permease.
 
 0.998
BCHO_0011
Sugar ABC transporter substrate-binding protein.
 
 0.995
BCHO_0022
Sugars ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.989
BCHO_1681
Sugar ABC transporter permease.
 
 0.979
BCHO_1272
ABC transporter permease.
 
 0.970
BCHO_1684
ABC transporter substrate-binding protein.
 
 0.942
BCHO_1270
Sugars ABC transporter substrate-binding protein.
  
 0.928
BCHO_0563
Thiamine ABC transporter ATP-binding protein.
 
 
 0.886
BCHO_0012
Xylose repressor.
 
   
 0.835
BCHO_0188
Sugar ABC transporter permease.
 
 
 0.834
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.