Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0044GntR family transcriptional regulator. (249 aa)    
Predicted Functional Partners:
BCHO_0043
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.855
BCHO_0045
Alpha beta hydrolase.
 
     0.582
BCHO_1256
Putative N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.581
BCHO_1228
Regulatory protein GntR.
 
  
 0.532
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.524
BCHO_0042
Amino acid ABC transporter permease.
       0.506
BCHO_0149
Cytosolic protein.
  
  
 0.468
BCHO_1616
Cupin domain protein.
  
  
 0.466
BCHO_1690
Transcriptional regulator.
   
    0.442
rbsK
Sugar kinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
   
 0.433
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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