Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
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Co-expression
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[Homology]
Score
BCHO_0099LacI-type transcriptional regulator. (342 aa)    
Predicted Functional Partners:
BCHO_0168
Sucrose operon repressor ScrR.
  
     0.772
BCHO_1248
LacI-type transcriptional regulator.
  
     0.772
BCHO_1683
LacI-type response repressor.
  
     0.770
BCHO_0097
Galactoside symporter.
 
   
 0.766
BCHO_1018
Glutamate synthase.
    
 
 0.700
BCHO_1269
LacI family transcriptional regulator.
  
     0.615
BCHO_0098
Beta-galactosidase.
     
 0.549
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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