STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0118Cell division membrane protein; Belongs to the SEDS family. (507 aa)    
Predicted Functional Partners:
BCHO_0117
Penicillin binding protein transpeptidase.
 
 0.999
BCHO_0347
Peptidoglycan synthetase.
 
 
 0.946
BCHO_0115
Serine-threonine protein kinase.
 
 
 0.934
BCHO_0120
FHA domain containing protein.
 
   
 0.930
BCHO_0116
Serine-threonine protein kinase.
 
 
 0.919
BCHO_0119
Phosphoprotein phosphatase.
 
  
 0.908
BCHO_0121
Forkhead-associated protein.
 
   
 0.908
BCHO_0339
Cell division protein.
 
 
 0.885
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.765
BCHO_0341
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.
 
  
 0.717
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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