Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0124Lysophospholipase L2 PLDB. (357 aa)    
Predicted Functional Partners:
BCHO_0155
NAD-dependent epimerase/dehydratase.
  
   0.813
BCHO_0125
Putative permease.
     
 0.543
BCHO_0122
Dipeptidyl peptidase IV.
 
   
 0.511
BCHO_0123
Long-chain-fatty acid CoA ligase.
     
 0.502
BCHO_0574
acyl-CoA thioesterase II.
  
     0.489
BCHO_0117
Penicillin binding protein transpeptidase.
   
   0.441
BCHO_0121
Forkhead-associated protein.
       0.414
BCHO_0959
Hypothetical protein.
  
    0.405
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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