Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0132Membrane protein. (250 aa)    
Predicted Functional Partners:
BCHO_0131
Histidine kinase.
 
     0.759
BCHO_1591
Heme utilization or adhesion related exo protein.
  
     0.734
BCHO_0590
Transmembrane serine/threonine- protein kinase B.
 
  
 0.713
BCHO_1296
Glutamine amidotransferase, class-II.
  
     0.705
BCHO_0257
Serine/threonine protein kinase; BLASTx: 4-75; 352-1842.
  
     0.698
BCHO_0273
Tetracycline resistance protein.
  
     0.684
BCHO_1590
Hypothetical protein.
  
     0.673
BCHO_0130
LuxR family transcriptional regulator.
  
    0.664
BCHO_0289
AcrR family transcriptional regulator.
  
    0.546
BCHO_0308
Cation efflux protein.
 
    0.546
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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