BCHO_0137 protein (Bifidobacterium choerinum)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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co-expression

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[Homology]

Score

BCHO_0137

DO serine protease. (571 aa)

Predicted Functional Partners:

BCHO_0443

0.953

rpsF

0.681

rplK

0.662

rpsI

0.640

rpsM

0.632

BCHO_0138

0.630

rpsE

0.623

rpsH

0.615

BCHO_1405

0.581

BCHO_0419

0.569

Your Current Organism:

Bifidobacterium choerinum

NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCHO_0137	BCHO_0138	BCHO_0137	BCHO_0138	DO serine protease.	Cation-transporting ATPase V.	0.630
BCHO_0137	BCHO_0419	BCHO_0137	BCHO_0419	DO serine protease.	Sensor histidine kinase.	0.569
BCHO_0137	BCHO_0443	BCHO_0137	BCHO_0443	DO serine protease.	ATPase AAA.	0.953
BCHO_0137	BCHO_1405	BCHO_0137	BCHO_1405	DO serine protease.	Histidine kinase sensor of two component system.	0.581
BCHO_0137	rplK	BCHO_0137	BCHO_0937	DO serine protease.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.662
BCHO_0137	rpsE	BCHO_0137	BCHO_1444	DO serine protease.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.623
BCHO_0137	rpsF	BCHO_0137	BCHO_1595	DO serine protease.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.681
BCHO_0137	rpsH	BCHO_0137	BCHO_1447	DO serine protease.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.615
BCHO_0137	rpsI	BCHO_0137	BCHO_1008	DO serine protease.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.640
BCHO_0137	rpsM	BCHO_0137	BCHO_1437	DO serine protease.	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.632
BCHO_0138	BCHO_0137	BCHO_0138	BCHO_0137	Cation-transporting ATPase V.	DO serine protease.	0.630
BCHO_0419	BCHO_0137	BCHO_0419	BCHO_0137	Sensor histidine kinase.	DO serine protease.	0.569
BCHO_0443	BCHO_0137	BCHO_0443	BCHO_0137	ATPase AAA.	DO serine protease.	0.953
BCHO_1405	BCHO_0137	BCHO_1405	BCHO_0137	Histidine kinase sensor of two component system.	DO serine protease.	0.581
rplK	BCHO_0137	BCHO_0937	BCHO_0137	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	DO serine protease.	0.662
rplK	rpsE	BCHO_0937	BCHO_1444	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.993
rplK	rpsF	BCHO_0937	BCHO_1595	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.989
rplK	rpsH	BCHO_0937	BCHO_1447	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.992
rplK	rpsI	BCHO_0937	BCHO_1008	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.992
rplK	rpsM	BCHO_0937	BCHO_1437	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.992