Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0140ferredoxin/ferredoxin-NADP reductase. (482 aa)    
Predicted Functional Partners:
BCHO_1018
Glutamate synthase.
  
 
 0.999
BCHO_0997
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 
 
 
 0.831
BCHO_1157
Inosine 5-monophosphate dehydrogenase.
  
 
 0.830
BCHO_1115
Dihydroorotate dehydrogenase electron transfer subunit.
   
 
 0.679
htpX
Heat shock protein HtpX; Belongs to the peptidase M48B family.
       0.630
BCHO_1550
Mn2+/Zn2+ ABC transporter permease.
 
     0.568
BCHO_0139
Hypothetical protein.
       0.544
BCHO_0571
O-acetylhomoserine (thiol)-lyase.
  
    0.511
BCHO_1316
O-acetylhomoserine sulfhydrylase.
  
    0.511
BCHO_1625
Cell division protein DivIVA.
  
     0.437
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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