Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0149Cytosolic protein. (147 aa)    
Predicted Functional Partners:
BCHO_0148
Carboxymuconolactone decarboxylase.
    
 0.716
BCHO_1464
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.692
BCHO_0151
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
  
 0.548
BCHO_0150
Alpha/beta superfamily hydrolase.
  
    0.539
BCHO_0436
Adenylosuccinate lyase.
  
 
 0.504
BCHO_0136
Transcriptional regulator, AraC family.
  
 
 0.499
BCHO_0044
GntR family transcriptional regulator.
  
  
 0.468
BCHO_0147
methylated-DNA-protein- cysteinemethyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
       0.440
BCHO_0276
IclR-type transcriptional regulator.
  
  
 0.440
BCHO_0003
NAD-dependent protein deacetylase.
  
    0.420
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.