Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0168Sucrose operon repressor ScrR. (343 aa)    
Predicted Functional Partners:
BCHO_0671
Transcriptional repressor.
  
     0.774
BCHO_1248
LacI-type transcriptional regulator.
  
     0.774
BCHO_0099
LacI-type transcriptional regulator.
  
     0.772
BCHO_1269
LacI family transcriptional regulator.
  
     0.726
BCHO_1018
Glutamate synthase.
    
 
 0.700
BCHO_0383
Beta-(1-2)-fructofuranosidase; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.572
BCHO_0169
Sucrose phosphorylase.
 
  
 0.458
BCHO_0599
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.456
rbsK
Sugar kinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.413
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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