Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0198ABC transporter ATP-binding protein. (233 aa)    
Predicted Functional Partners:
BCHO_0199
Transmembrane protein.
 
 
 0.980
BCHO_0520
Peptides ABC transporter ATP-binding protein.
 
   
0.889
BCHO_0336
Dipeptide transport ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 
   
0.828
BCHO_1622
Transporter.
 
 
 0.781
BCHO_1298
ABC transporter ATP-binding protein.
  
     0.638
BCHO_1540
ABC transporter integral membrane protein.
  
 
 0.637
BCHO_0200
Amino acid permease.
       0.586
BCHO_0197
AcrR family transcriptional regulator.
   
   0.567
BCHO_1299
ABC transporter permease.
 
 
 0.551
BCHO_0781
ABC transporter permease.
 
 
 0.544
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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