Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BCHO_0237Phosphodiesterase. (355 aa)    
Predicted Functional Partners:
BCHO_0236
Unusual protein kinase.
       0.711
BCHO_1203
Membrane channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
 
 0.551
BCHO_1464
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.547
BCHO_0235
Cytosolic protein.
 
     0.544
BCHO_1588
Glycerol uptake facilitator-like protein in Mip family; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.491
BCHO_1586
glutamyl-Q tRNA(Asp) synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.481
BCHO_0590
Transmembrane serine/threonine- protein kinase B.
  
     0.476
BCHO_1073
Cytosolic protein.
  
 
 0.466
BCHO_0289
AcrR family transcriptional regulator.
  
   
 0.458
BCHO_0257
Serine/threonine protein kinase; BLASTx: 4-75; 352-1842.
  
     0.429
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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