Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BCHO_0261 | BCHO_0264 | BCHO_0261 | BCHO_0264 | Pre-pilin peptidase. | DNA polymerase III subunit delta. | 0.768 |
| BCHO_0261 | BCHO_0265 | BCHO_0261 | BCHO_0265 | Pre-pilin peptidase. | Putative phosphatidylethanolamine-binding protein. | 0.566 |
| BCHO_0261 | tmk | BCHO_0261 | BCHO_0263 | Pre-pilin peptidase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.698 |
| BCHO_0261 | topA | BCHO_0261 | BCHO_0262 | Pre-pilin peptidase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.698 |
| BCHO_0264 | BCHO_0261 | BCHO_0264 | BCHO_0261 | DNA polymerase III subunit delta. | Pre-pilin peptidase. | 0.768 |
| BCHO_0264 | BCHO_0265 | BCHO_0264 | BCHO_0265 | DNA polymerase III subunit delta. | Putative phosphatidylethanolamine-binding protein. | 0.738 |
| BCHO_0264 | pheT | BCHO_0264 | BCHO_0778 | DNA polymerase III subunit delta. | phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.543 |
| BCHO_0264 | tmk | BCHO_0264 | BCHO_0263 | DNA polymerase III subunit delta. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.886 |
| BCHO_0264 | topA | BCHO_0264 | BCHO_0262 | DNA polymerase III subunit delta. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.856 |
| BCHO_0265 | BCHO_0261 | BCHO_0265 | BCHO_0261 | Putative phosphatidylethanolamine-binding protein. | Pre-pilin peptidase. | 0.566 |
| BCHO_0265 | BCHO_0264 | BCHO_0265 | BCHO_0264 | Putative phosphatidylethanolamine-binding protein. | DNA polymerase III subunit delta. | 0.738 |
| BCHO_0265 | tmk | BCHO_0265 | BCHO_0263 | Putative phosphatidylethanolamine-binding protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.738 |
| BCHO_0265 | topA | BCHO_0265 | BCHO_0262 | Putative phosphatidylethanolamine-binding protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.704 |
| BCHO_0515 | pheT | BCHO_0515 | BCHO_0778 | ATP-dependent DNA helicase RecQ. | phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.523 |
| BCHO_0515 | polA | BCHO_0515 | BCHO_1148 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.951 |
| BCHO_0515 | recA | BCHO_0515 | BCHO_1371 | ATP-dependent DNA helicase RecQ. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.961 |
| BCHO_0515 | topA | BCHO_0515 | BCHO_0262 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.999 |
| BCHO_0799 | leuS | BCHO_0799 | BCHO_0744 | Hypothetical protein. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.602 |
| BCHO_0799 | pheT | BCHO_0799 | BCHO_0778 | Hypothetical protein. | phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.899 |
| BCHO_0799 | recA | BCHO_0799 | BCHO_1371 | Hypothetical protein. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.569 |
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