Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0296Ribokinase family sugar kinase. (346 aa)    
Predicted Functional Partners:
BCHO_1296
Glutamine amidotransferase, class-II.
 
     0.598
BCHO_1590
Hypothetical protein.
  
     0.572
BCHO_1044
ErfK/YbiS/YcfS/YnhG protein.
  
     0.512
BCHO_0365
Phosphoribosyl isomerase A; Belongs to the HisA/HisF family.
  
    0.484
BCHO_1464
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.474
BCHO_0590
Transmembrane serine/threonine- protein kinase B.
  
     0.472
BCHO_1568
Type I restriction-modification system methylation subunit.
  
     0.469
BCHO_0132
Membrane protein.
 
     0.454
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 
 0.449
BCHO_0250
Pilus biosynthesis protein TadE.
  
     0.447
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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