Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0337Dipeptide/oligopeptide/nickel ABC transporter permease. (367 aa)    
Predicted Functional Partners:
BCHO_0521
Peptide ABC transporter substrate-binding protein.
 
 0.992
BCHO_0336
Dipeptide transport ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 
 
 0.986
BCHO_0524
Dipeptide ABC transporter substrate-binding protein.
 0.986
BCHO_0609
ABC transporter substrate-binding protein.
 
 0.982
BCHO_1546
Peptides ABC transporter permease.
 
 0.962
BCHO_0338
Peptide ABC transporter substrate-binding protein.
 
 
 0.948
BCHO_1543
Oligopeptide ABC transporter periplasmic protein.
 
 
 0.944
BCHO_0523
Peptide ABC transporter permease.
  
  
 
0.923
BCHO_1547
Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.915
BCHO_0520
Peptides ABC transporter ATP-binding protein.
 
 
 0.832
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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