Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0403DEAD/DEAH box helicase. (855 aa)    
Predicted Functional Partners:
BCHO_0402
Recombination factor protein RarA.
       0.720
BCHO_0749
Hypothetical protein.
 
     0.640
BCHO_0401
Efflux-type transporter.
       0.517
BCHO_1220
ABC transporter.
  
     0.516
BCHO_0923
Hypothetical protein.
  
     0.477
BCHO_1516
Hypothetical protein.
  
     0.443
BCHO_1493
Endonuclease/exonuclease/phosphatase.
 
     0.437
BCHO_1086
Hypothetical protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.414
BCHO_0984
Hypothetical protein.
  
     0.410
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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