Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0417Hypothetical protein. (565 aa)    
Predicted Functional Partners:
BCHO_0418
Cold shock protein.
       0.855
rbpA
Membrane protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.766
BCHO_0765
Superfamily II DNA and RNA helicase.
  
     0.754
BCHO_1629
Hydrolase.
  
     0.749
BCHO_1346
Hypothetical protein.
  
     0.744
BCHO_1627
Hypothetical protein.
  
     0.739
BCHO_0244
Septum site determining protein.
  
     0.731
BCHO_0272
Phosphoglycerate mutase.
  
     0.727
BCHO_0447
Primosome assembly protein PriA.
  
     0.714
BCHO_0412
Cytosolic protein.
  
     0.707
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.