Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0487Arylsulfatase. (701 aa)    
Predicted Functional Partners:
BCHO_0488
Putative esterase.
 
     0.514
BCHO_0940
Membrane protein.
  
     0.512
BCHO_0346
UDP-N-acetylmuramyl-tripeptide synthetase.
  
     0.476
BCHO_1466
Translation elongation factor.
  
    0.452
BCHO_1210
Preprotein translocase subunit YajC.
 
     0.450
BCHO_0489
lysyl-tRNA synthetase.
       0.418
BCHO_1155
Periplasmic-binding protein domain protein.
  
     0.410
BCHO_0374
ATPase.
 
     0.403
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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