STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0488Putative esterase. (471 aa)    
Predicted Functional Partners:
BCHO_0489
lysyl-tRNA synthetase.
 
     0.965
BCHO_0026
Oxidoreductase.
  
     0.561
BCHO_0487
Arylsulfatase.
 
     0.514
BCHO_0947
Fatty acid synthase Fas.
  
   
 0.486
BCHO_0374
ATPase.
 
     0.471
BCHO_0940
Membrane protein.
 
     0.464
BCHO_1591
Heme utilization or adhesion related exo protein.
  
     0.442
BCHO_0543
Membrane protein.
  
     0.436
BCHO_0174
Na+/sugar symporter.
 
     0.422
BCHO_0730
Putative ATP-dependent DNA helicase.
 
     0.419
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.