Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0499Histone acetyltransferase. (174 aa)    
Predicted Functional Partners:
BCHO_0498
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.689
luxS
LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
       0.682
BCHO_0502
Acetyltransferase.
 
      0.679
BCHO_0497
Deoxyguanosinetriphosphate triphosphohydrolase-like protein; Belongs to the dGTPase family. Type 2 subfamily.
       0.630
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
    0.575
BCHO_0177
Hypothetical protein.
   
 
 0.463
BCHO_0225
Dipeptidase.
  
     0.441
BCHO_0266
Dipeptidase.
  
     0.440
BCHO_0515
ATP-dependent DNA helicase RecQ.
       0.414
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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