BCHO_0549 protein (Bifidobacterium choerinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BCHO_0549

HAD superfamily hydrolase. (281 aa)

Predicted Functional Partners:

BCHO_0548

0.855

BCHO_0550

0.700

BCHO_0547

0.538

proS

0.427

Your Current Organism:

Bifidobacterium choerinum

NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCHO_0547	BCHO_0548	BCHO_0547	BCHO_0548	Putative NADH-ubiquinone oxidoreductase chain 6.	ATP-dependent endonuclease.	0.545
BCHO_0547	BCHO_0549	BCHO_0547	BCHO_0549	Putative NADH-ubiquinone oxidoreductase chain 6.	HAD superfamily hydrolase.	0.538
BCHO_0547	BCHO_0550	BCHO_0547	BCHO_0550	Putative NADH-ubiquinone oxidoreductase chain 6.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.428
BCHO_0547	proS	BCHO_0547	BCHO_0546	Putative NADH-ubiquinone oxidoreductase chain 6.	Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]	0.670
BCHO_0548	BCHO_0547	BCHO_0548	BCHO_0547	ATP-dependent endonuclease.	Putative NADH-ubiquinone oxidoreductase chain 6.	0.545
BCHO_0548	BCHO_0549	BCHO_0548	BCHO_0549	ATP-dependent endonuclease.	HAD superfamily hydrolase.	0.855
BCHO_0548	BCHO_0550	BCHO_0548	BCHO_0550	ATP-dependent endonuclease.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.749
BCHO_0548	proS	BCHO_0548	BCHO_0546	ATP-dependent endonuclease.	Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]	0.624
BCHO_0549	BCHO_0547	BCHO_0549	BCHO_0547	HAD superfamily hydrolase.	Putative NADH-ubiquinone oxidoreductase chain 6.	0.538
BCHO_0549	BCHO_0548	BCHO_0549	BCHO_0548	HAD superfamily hydrolase.	ATP-dependent endonuclease.	0.855
BCHO_0549	BCHO_0550	BCHO_0549	BCHO_0550	HAD superfamily hydrolase.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.700
BCHO_0549	proS	BCHO_0549	BCHO_0546	HAD superfamily hydrolase.	Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]	0.427
BCHO_0550	BCHO_0547	BCHO_0550	BCHO_0547	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Putative NADH-ubiquinone oxidoreductase chain 6.	0.428
BCHO_0550	BCHO_0548	BCHO_0550	BCHO_0548	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	ATP-dependent endonuclease.	0.749
BCHO_0550	BCHO_0549	BCHO_0550	BCHO_0549	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	HAD superfamily hydrolase.	0.700
BCHO_0550	proS	BCHO_0550	BCHO_0546	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]	0.587
proS	BCHO_0547	BCHO_0546	BCHO_0547	Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]	Putative NADH-ubiquinone oxidoreductase chain 6.	0.670
proS	BCHO_0548	BCHO_0546	BCHO_0548	Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]	ATP-dependent endonuclease.	0.624
proS	BCHO_0549	BCHO_0546	BCHO_0549	Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]	HAD superfamily hydrolase.	0.427
proS	BCHO_0550	BCHO_0546	BCHO_0550	Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacy [...]	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.587