Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0575Membrane protein. (192 aa)    
Predicted Functional Partners:
BCHO_0576
Hypothetical protein; Dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase multi-domain protein.
       0.862
BCHO_0584
Permease.
 
     0.837
BCHO_0581
ABC transporter permease.
 
     0.830
BCHO_1419
Hypothetical protein.
  
     0.766
BCHO_0435
Esterase/lipase.
  
     0.744
BCHO_1128
Organic solvents resistance ABC transporter permease.
  
     0.739
BCHO_0256
Hypothetical protein.
  
     0.737
BCHO_0986
Superfamily I DNA and RNA helicase.
  
     0.735
BCHO_1631
Aminoglycoside phosphotransferase.
  
     0.714
BCHO_0631
GTPase regulator-like protein.
  
     0.713
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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