STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0652Glycosyl transferase. (257 aa)    
Predicted Functional Partners:
BCHO_0684
Flippase Wzx.
 
  
 0.745
BCHO_0654
Flippase Wzx.
 
  
 0.706
BCHO_0653
Methyl-accepting chemotaxis protein.
     
 0.519
BCHO_0663
Glycosyl transferase group 1.
 
  
 0.483
BCHO_0676
Galactosyl transferase CpsD.
 
  
 0.442
BCHO_0660
Capsular polysaccharide biosynthesis protein.
 
  
 0.433
BCHO_0659
Capsular polysaccharide biosynthesis protein.
 
  
 0.415
BCHO_0641
Etk-like tyrosine kinase.
 
   
 0.401
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.