Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
BCHO_0659Capsular polysaccharide biosynthesis protein. (370 aa)    
Predicted Functional Partners:
BCHO_0658
Glycosyltransferase family 1.
 
    
0.856
BCHO_0663
Glycosyl transferase group 1.
 
     0.784
BCHO_0657
Membrane protein.
       0.764
BCHO_0656
Serine O-acetyltransferase.
  
  
 0.762
BCHO_0660
Capsular polysaccharide biosynthesis protein.
 
    
0.718
BCHO_0676
Galactosyl transferase CpsD.
 
  
 0.690
BCHO_0662
Flippase.
 
  
 0.688
glgB
Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.631
BCHO_0687
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.611
BCHO_0664
Glycosyl transferase family 2.
 
 
 0.570
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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