STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0664Glycosyl transferase family 2. (336 aa)    
Predicted Functional Partners:
BCHO_0663
Glycosyl transferase group 1.
 
 
 0.800
BCHO_0662
Flippase.
 
  
 0.796
BCHO_0685
Glycosyl transferase family protein.
 
     0.719
BCHO_0585
Glycosyltransferase.
 
 
 0.672
BCHO_0658
Glycosyltransferase family 1.
 
 
 0.650
BCHO_0659
Capsular polysaccharide biosynthesis protein.
 
 
 0.570
BCHO_0660
Capsular polysaccharide biosynthesis protein.
 
 
 0.566
BCHO_0599
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.487
BCHO_0676
Galactosyl transferase CpsD.
 
  
 0.480
BCHO_0641
Etk-like tyrosine kinase.
 
  
 0.449
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.