Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BCHO_0691Membrane-bound transglycosylase. (352 aa)    
Predicted Functional Partners:
BCHO_0968
Cell division protein.
 
   
 0.751
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.743
BCHO_1347
DNA-binding protein.
  
     0.739
BCHO_0105
Hypothetical protein.
  
     0.695
BCHO_1581
Orotate phosphoribosyltransferase.
  
     0.661
BCHO_0437
Membrane protein.
  
     0.655
BCHO_1127
Membrane spanning protein.
  
     0.651
BCHO_0693
ADP-ribose pyrophosphatase.
 
     0.642
BCHO_0692
Thioredoxin.
       0.630
BCHO_0694
Hydrolase.
 
     0.597
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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