STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0705Lipoate protein ligase. (392 aa)    
Predicted Functional Partners:
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
 
 
 0.976
BCHO_0704
TM2 domain-containing protein.
       0.845
BCHO_0706
Transcriptional regulator with cyclic nucleotide-binding domain.
       0.689
BCHO_0791
Dihydrolipoamide dehydrogenase.
 
  
 0.662
BCHO_0707
Membrane carboxypeptidase.
       0.590
BCHO_0708
NADH-dependent flavin oxidoreductase YqjM.
       0.530
BCHO_0697
ABC transporter ATP-binding protein.
 
     0.492
BCHO_0693
ADP-ribose pyrophosphatase.
 
     0.449
BCHO_1024
Branched-chain amino acid aminotransferase.
  
   0.430
BCHO_0701
Protease II.
       0.414
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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