Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0728ATPase AAA. (1995 aa)    
Predicted Functional Partners:
BCHO_0725
Transglutaminase.
 
     0.906
BCHO_0726
Hypothetical protein.
 
     0.904
BCHO_0729
Putative serine/threonine-protein kinase PknK.
 
  
 0.807
BCHO_0722
Putative FHA domain protein.
 
     0.770
BCHO_0324
ATP-binding protein.
  
     0.714
BCHO_1590
Hypothetical protein.
  
    0.709
BCHO_0727
ATPase AAA.
       0.707
BCHO_0587
Peptidyl-prolyl cis-trans isomerase.
  
    0.667
BCHO_0286
Hypothetical protein.
  
    0.655
BCHO_0581
ABC transporter permease.
  
     0.652
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.