Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tsaDDNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (354 aa)    
Predicted Functional Partners:
BCHO_0739
Peptidase M22, glycoprotease.
 
 0.998
BCHO_0740
ATPase.
 
 0.997
BCHO_0738
Ribosomal-protein-alanine N-acetyltransferase.
  
  
 0.850
pheT
phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.782
BCHO_0554
Sua5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
 
 0.767
BCHO_0742
Competence protein.
 
    0.732
BCHO_0741
DNA polymerase III subunit delta.
       0.724
BCHO_0596
Hypothetical protein.
  
 0.719
BCHO_1383
Hypothetical protein.
  
 0.719
BCHO_0021
Lipopolysaccharide kinase.
  
 0.718
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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