Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0765Superfamily II DNA and RNA helicase. (584 aa)    
Predicted Functional Partners:
BCHO_0764
HAD family hydrolase.
  
 
 0.905
BCHO_0763
Hemolysin A.
  
  
 0.864
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
  0.832
BCHO_1629
Hydrolase.
  
     0.759
BCHO_0417
Hypothetical protein.
  
     0.754
BCHO_0730
Putative ATP-dependent DNA helicase.
 
 
   0.749
BCHO_0026
Oxidoreductase.
  
     0.729
BCHO_0985
Tfp pilus assembly protein.
 
   0.714
BCHO_0272
Phosphoglycerate mutase.
 
    0.708
rbpA
Membrane protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.705
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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