Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0782ABC transporter domain-containing protein. (237 aa)    
Predicted Functional Partners:
BCHO_0781
ABC transporter permease.
 
 
 0.792
BCHO_1622
Transporter.
 
 
 0.780
BCHO_0812
ABC transporter ATP-binding protein.
  
    0.745
BCHO_1540
ABC transporter integral membrane protein.
 
 
 0.723
BCHO_1227
ABC transporter ATP-binding protein.
 
     0.612
BCHO_1299
ABC transporter permease.
 
 
 0.593
pheS
phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.565
BCHO_0336
Dipeptide transport ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 
   
0.517
BCHO_0199
Transmembrane protein.
  
 
 0.471
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.426
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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