Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0834Gp22. (199 aa)    
Predicted Functional Partners:
BCHO_1479
Serine/tyrosine protein phosphatase.
   
   0.681
BCHO_0421
Membrane associated protein.
   
 
 0.644
BCHO_1343
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.582
BCHO_0833
Hypothetical protein.
       0.527
BCHO_0835
Hypothetical protein.
       0.523
BCHO_0836
Hypothetical protein.
       0.509
BCHO_0837
Thiamine biosynthesis protein ThiS.
       0.465
BCHO_0838
Hypothetical protein.
       0.465
BCHO_0839
Phage capsid protein.
       0.435
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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