Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0886BRO family, N-terminal domain protein. (270 aa)    
Predicted Functional Partners:
BCHO_0883
Hypothetical protein.
       0.773
BCHO_0884
Hypothetical protein.
       0.773
BCHO_0885
Hypothetical protein.
       0.773
BCHO_0887
Hypothetical protein.
       0.737
BCHO_0888
Hypothetical protein.
       0.572
BCHO_0890
Hypothetical protein.
       0.547
BCHO_1658
Recombinase.
     
 0.534
BCHO_0862
Gp72.
  
  
 0.491
BCHO_0876
Hypothetical protein.
       0.482
BCHO_0882
Hypothetical protein.
       0.476
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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