Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BCHO_0918ABC transporter permease. (568 aa)    
Predicted Functional Partners:
BCHO_0917
ABC transporter ATP-binding protein.
 
  
 0.911
BCHO_0391
Alpha/beta superfamily hydrolase.
  
     0.647
BCHO_0131
Histidine kinase.
 
    0.539
BCHO_0581
ABC transporter permease.
 
    0.529
BCHO_1409
Dipeptidylaminopeptidase/acylaminoacyl- peptidase.
 
     0.470
BCHO_1619
Proline iminopeptidase.
  
     0.438
BCHO_1404
Phage shock protein C, PspC.
  
     0.431
BCHO_1298
ABC transporter ATP-binding protein.
   
 
 0.430
BCHO_1517
Methicillin resistance protein.
  
     0.417
BCHO_0725
Transglutaminase.
 
     0.401
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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