Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BCHO_0939Regulator of polyketide synthase expression. (260 aa)    
Predicted Functional Partners:
BCHO_0447
Primosome assembly protein PriA.
  
     0.726
BCHO_0741
DNA polymerase III subunit delta.
  
     0.602
BCHO_1629
Hydrolase.
  
     0.597
BCHO_1549
Cytosolic protein.
  
     0.594
whiA
Sporulation protein; Involved in cell division and chromosome segregation.
  
     0.550
BCHO_1604
Oxppcycle protein.
  
     0.527
BCHO_1513
ATP-dependent DNA helicase UvrD.
  
     0.521
BCHO_0943
biotin-(acetyl-CoA carboxylase) ligase.
 
   
 0.505
BCHO_0940
Membrane protein.
 
     0.502
xseB
Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.499
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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