STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0959Hypothetical protein. (770 aa)    
Predicted Functional Partners:
BCHO_0590
Transmembrane serine/threonine- protein kinase B.
  
     0.674
BCHO_0958
LemA protein.
 
     0.626
BCHO_0391
Alpha/beta superfamily hydrolase.
 
     0.572
BCHO_1155
Periplasmic-binding protein domain protein.
  
     0.563
BCHO_1591
Heme utilization or adhesion related exo protein.
  
     0.555
BCHO_0257
Serine/threonine protein kinase; BLASTx: 4-75; 352-1842.
  
     0.554
BCHO_0960
Hypothetical protein.
      
0.553
BCHO_1590
Hypothetical protein.
  
     0.505
BCHO_1206
Membrane spanning protein.
  
     0.486
BCHO_1299
ABC transporter permease.
 
     0.481
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.