Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCHO_0984Hypothetical protein. (324 aa)    
Predicted Functional Partners:
BCHO_0749
Hypothetical protein.
  
     0.746
BCHO_0653
Methyl-accepting chemotaxis protein.
  
     0.659
BCHO_0642
Methyl-accepting chemotaxis protein.
  
     0.655
BCHO_0689
Methyl-accepting chemotaxis protein.
  
     0.626
BCHO_0299
Fibronectin-binding protein.
  
     0.591
BCHO_0725
Transglutaminase.
  
     0.560
BCHO_0728
ATPase AAA.
  
     0.526
BCHO_0590
Transmembrane serine/threonine- protein kinase B.
  
     0.522
BCHO_1570
Multidrug ABC transporter permease.
  
     0.485
BCHO_1099
Bile salt hydrolase.
  
     0.468
Your Current Organism:
Bifidobacterium choerinum
NCBI taxonomy Id: 35760
Other names: ATCC 27686, B. choerinum, CIP 103378, DSM 20434, LMG 10510, LMG:10510, strain SU806
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