Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BCHO_1032 | BCHO_1034 | BCHO_1032 | BCHO_1034 | Membrane protein. | PhoH-like protein. | 0.903 |
BCHO_1032 | BCHO_1035 | BCHO_1032 | BCHO_1035 | Membrane protein. | Histidine triad (HIT) protein. | 0.664 |
BCHO_1032 | BCHO_1036 | BCHO_1032 | BCHO_1036 | Membrane protein. | 16S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.596 |
BCHO_1032 | BCHO_1037 | BCHO_1032 | BCHO_1037 | Membrane protein. | tRNA/rRNA methyltransferase. | 0.462 |
BCHO_1032 | era | BCHO_1032 | BCHO_1031 | Membrane protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.948 |
BCHO_1032 | ybeY | BCHO_1032 | BCHO_1033 | Membrane protein. | Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.937 |
BCHO_1034 | BCHO_1032 | BCHO_1034 | BCHO_1032 | PhoH-like protein. | Membrane protein. | 0.903 |
BCHO_1034 | BCHO_1035 | BCHO_1034 | BCHO_1035 | PhoH-like protein. | Histidine triad (HIT) protein. | 0.688 |
BCHO_1034 | BCHO_1036 | BCHO_1034 | BCHO_1036 | PhoH-like protein. | 16S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.444 |
BCHO_1034 | BCHO_1037 | BCHO_1034 | BCHO_1037 | PhoH-like protein. | tRNA/rRNA methyltransferase. | 0.485 |
BCHO_1034 | era | BCHO_1034 | BCHO_1031 | PhoH-like protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.882 |
BCHO_1034 | hpf | BCHO_1034 | BCHO_1369 | PhoH-like protein. | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.460 |
BCHO_1034 | recO | BCHO_1034 | BCHO_0390 | PhoH-like protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.683 |
BCHO_1034 | rsfS | BCHO_1034 | BCHO_0751 | PhoH-like protein. | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.555 |
BCHO_1034 | ybeY | BCHO_1034 | BCHO_1033 | PhoH-like protein. | Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.979 |
BCHO_1035 | BCHO_1032 | BCHO_1035 | BCHO_1032 | Histidine triad (HIT) protein. | Membrane protein. | 0.664 |
BCHO_1035 | BCHO_1034 | BCHO_1035 | BCHO_1034 | Histidine triad (HIT) protein. | PhoH-like protein. | 0.688 |
BCHO_1035 | BCHO_1036 | BCHO_1035 | BCHO_1036 | Histidine triad (HIT) protein. | 16S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.702 |
BCHO_1035 | BCHO_1037 | BCHO_1035 | BCHO_1037 | Histidine triad (HIT) protein. | tRNA/rRNA methyltransferase. | 0.627 |
BCHO_1035 | era | BCHO_1035 | BCHO_1031 | Histidine triad (HIT) protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.708 |
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